PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004493757.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 504aa    MW: 55738.9 Da    PI: 7.8902
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004493757.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376e-12356402455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I +Lq
  XP_004493757.1 356 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITHITDLQ 402
                     799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.2E-3752227IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.456352401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.28E-14355406No hitNo description
SuperFamilySSF474593.27E-18355424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-17356422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-9356402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-14358407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00971452503No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MKKGERFFEN QEDKAMLESV LGTEAVTFFS SAVSKHVFSD VVVPPNMDLG IHKRLCHLVK  60
GSKWSYAILW QVAGLKSGGY VLKYGDGHCE DLKVDKRNEK DGEKDDFRRK VLGKLHACWG  120
GSDSIENVYK KLDNVSDLYM LYLTSVYYVF GFNSQYGPGN SFKCVKPSWA ADAGSCSNQY  180
ESRSFLAKSA GFQTVVFVPL KTGVVEFGSM ELMPEEQGFL DLVRTTFGES SSGQAKVVPK  240
IFGRELSLGD AKSPSITISF SPKVEDESGF TSDSYEVHTL GANHAYGNSS NGGVGDSTEA  300
KMFPQLGQMV PGNFTSQARV SSADLGNEES SSPLADERKP RKRGRKPANG REEPLNHVEA  360
ERQRREKLNQ RFYALRAVVP NISKMDKASL LGDAITHITD LQKKIKLLET EKNMVNNKGQ  420
QLSFQDIDFQ ARQDDAIVRV SCPMDIHPVS GIVKIFREHQ IVAQEANVST AQDKVIHTFS  480
IRTQGGEAAA VQLKEKLEAS LSKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1337345RKPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1336851e-169BT133685.1 Medicago truncatula clone JCVI-FLMt-16B12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493757.10.0PREDICTED: transcription factor bHLH3
TrEMBLA0A072UDK30.0A0A072UDK3_MEDTR; ABA-inducible bHLH-type transcription factor
STRINGGLYMA10G03950.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-161bHLH family protein